Best Contractor Invoicing Software

Find invoicing and payment tools built around how contractors actually bill: a deposit invoice once the estimate is approved, progress or milestone invoices as work moves forward, change-order invoices when the scope grows, retainage released at closeout, and a final invoice after the punch list is signed off, paid online, in the field, or over the phone. Clearwater Processing works with HVAC, plumbing, electrical, roofing, remodeling, landscaping, and general contractors, offering invoice payment options, virtual terminal and standalone terminal setups, QuickBooks and Xero integration, back-office billing for maintenance agreements, and personalized US-based support.

Contractor reviewing digital invoices and payment activity on a laptop

Our Contractor Invoicing Services

Payment and invoicing tools help HVAC, plumbing, electrical, roofing, remodeling, landscaping, and general contractors bill the way jobs actually run: a deposit invoice once the estimate is signed, progress invoices as work is completed, change-order invoices when the scope grows, retainage released at closeout, and recurring charges for maintenance agreements.

Invoice Payment Solutions

Send a deposit invoice with a card payment option once the estimate is approved, then send change-order and final invoices the same way, so homeowners and commercial clients can pay online by card instead of mailing a check. Including the job name or number on each invoice makes every payment easy to post to the right job.

Accounting Integrations

Connect payment processing with QuickBooks and Xero so each deposit, progress payment, and final payment matches the open invoice for that job, contractors keep their accounting software, and processing fees show clearly when you review job costs at month-end or closeout.

Recurring Billing

Bill maintenance agreements through back-office billing, such as monthly or annual HVAC tune-up plans, seasonal landscaping or snow-removal contracts, and pool or lawn service plans, charged on the agreed schedule to a card the customer authorized at sign-up instead of sending a new invoice after every visit. Clearwater can automatically update a customer’s card on file before it expires, so maintenance-plan charges keep running without the office calling for new card details and the agreement’s revenue isn’t lost to an expired card.

Deposits & Progress Billing

Collect a deposit invoice before materials are ordered, milestone invoices as a remodel or roofing job reaches each stage, and the final balance once the punch list is signed off. On commercial work where the general contractor holds retainage, keep the retained amount as its own line so it can be invoiced at closeout, all by card through the same invoicing workflow. Showing the contract amount, approved change orders, amounts previously billed, and the balance to finish on each progress invoice helps the customer see exactly what they are paying for.

Job-Site & Phone Payments

When a customer calls the office to pay an open invoice, or the final balance is settled at the walkthrough, key the payment into a virtual terminal on any internet-connected device and apply it to that job’s invoice. Add a standalone terminal for the office and protect card data through the PCI compliance program with $100,000 in breach protection insurance.

Lower Costs On Large Tickets

On high-value invoices such as HVAC system replacements, roof replacements, full remodels, or commercial build-outs, the processing cost on a single final payment adds up quickly. A merchant statement analysis deciphers every line item and shows where card processing costs can come down, with Clearwater clients seeing 10%–30% savings on average.

Change-Order Invoices

When a homeowner adds a second bathroom fan or a general contractor approves extra ductwork, turn the signed change order into its own invoice and collect payment, or a deposit on it, by card before the added work begins. Keep it tied to the original job so the final invoice reflects the revised contract amount and nothing is left to argue about at closeout.

Dual Pricing on Large Invoices

Use Clearwater Processing’s custom invoicing with dual pricing or a zero-fee (surcharge) program to show a card price and a check or ACH price on deposit, progress, and final invoices, where card-network rules and state law allow. On a roof replacement or HVAC system install, that gives customers a choice while keeping card costs from eating into the job’s margin.

Service-Call Invoicing

For HVAC, plumbing, and electrical service calls, turn the finished work order into an invoice before the technician leaves, listing labor, parts, and any flat-rate charges, then key the card into a virtual terminal on a phone or tablet or email the invoice for the customer to pay online. Emergency and after-hours calls can be paid over the phone, so fewer small invoices sit unpaid.

Multi-Branch & Division Reporting

Contractors running separate HVAC, plumbing, and electrical divisions, or crews out of more than one branch, can review deposits, progress payments, and final balances for each one through parent and sub-parent reporting, while the owner sees combined results across the business.

Connected Payment Workflows

Make Contractor Payments Easier to Manage

Contractors need more than a way to create an invoice—they need dependable payment collection that keeps cash moving between jobs. A single remodel can produce a deposit invoice when the contract is signed, progress invoices at each milestone, one or two change-order invoices, and a final invoice after the punch list, while commercial work adds net terms and retainage held until closeout. Crews and suppliers often have to be paid before a homeowner or general contractor settles the bill, and mailed checks arrive late. Clearwater Processing helps trade contractors close those gaps with invoice card payments, a virtual terminal for payments taken from the job site or by phone, standalone terminals for the office, and next-day funding, along with QuickBooks and Xero integration and back-office billing for recurring maintenance agreements. Billing also differs by trade. HVAC, plumbing, and electrical service calls are usually invoiced and paid the same day the work is done, often at the customer’s door, while roofers and remodelers bill a single project in stages over weeks, and landscapers, pool service companies, and pest control providers bill the same customers on a recurring schedule, with automatic card updating keeping those plans billing when a customer’s card is about to expire. Contractor invoicing also has to keep up when the job changes. A signed change order should become its own invoice, or at least its own line, before the added work starts, so the extra scope doesn’t turn into a disagreement at the final walkthrough. On commercial work, progress billing usually follows the general contractor’s schedule of values, with each pay application showing the percentage complete, the retainage held, and lien waivers exchanged as payments clear. Clearwater Processing’s custom invoicing supports dual pricing and zero-fee (surcharge) programs where card-network rules and state law allow, which can help on large-ticket invoices, and contractors running crews out of more than one branch can review payments by location through parent and sub-parent reporting.

Contractor managing invoices and card payments through connected software
The Clearwater Difference

Why Choose Clearwater Processing?

Clearwater Processing combines payment technology with personalized support for contractors and businesses of different sizes.

Tailored Solutions

Choose processing environments suited to how your trade bills: invoices for deposits, progress payments, and change orders, dual pricing or zero-fee programs on large tickets, back-office billing for maintenance agreements, ecommerce gateways, or standalone terminals for the office.

Accounting Integration

Connect payment processing with QuickBooks and Xero so card payments match job invoices, without requiring a change to accounting software.

Personal Support

Dedicated representatives give clients their personal cell phone numbers, so a billing question from the office or a job site reaches someone who knows your account. That’s a single point of contact with industry experience, not a call center, backed by US-based support 24/7/365.

Clear Reporting

Comprehensive payment reporting and statement analysis help you review deposits, progress payments, final payments, and processing fees across jobs.

Meet Clearwater Processing

Experienced payment specialists support tailored merchant service environments for trade contractors and other businesses.

Clearwater Processing has been setting up payment processing environments for merchants since 2003, and its executives bring decades of experience in credit card processing and merchant services. Its processing environments are tailored to each merchant and include invoice payment solutions, ecommerce gateways, back-office billing, standalone terminals, PCI compliance, merchant statement analysis, reporting, and funding support. For trade contractors, that means deposit and progress invoices, phone and job-site payments, and maintenance-agreement billing can run through one merchant account. Clearwater Processing serves clients in 32 states across the United States and maintains locations in South Florida, New York City, and Arizona, pairing transparent merchant services with dedicated representatives and round-the-clock US-based backend phone support.

SinceServing merchants since 2003
Service ReachClients in 32 states across the United States
SupportUS-based backend support available 24/7/365

Frequently Asked Questions

What is the best invoice software for contractors?

The best option matches how your jobs are billed. A service plumber may need one invoice paid the day of the call, while a remodeler sends a deposit invoice, several progress invoices, a change order or two, and a final invoice on the same job. Look for software that turns an approved estimate into an invoice, accepts card payments on every invoice type, posts each payment to the correct job in your accounting software, and handles recurring maintenance billing. Clearwater Processing offers invoicing solutions with card payment collection, QuickBooks and Xero integration, back-office billing, and reporting, so trade contractors can collect deposits, progress payments, and final balances by invoice, phone, or email within one merchant services environment.

How can contractors collect deposits before starting a job?

What is the best invoicing software for a construction company?

Can contractors pass credit card fees to customers on large invoices?

How fast do contractors get paid after a card payment?

Can contractors accept credit card payments through invoices?

Does Clearwater Processing integrate with QuickBooks and Xero?

Can contractor invoicing software support recurring payments?

What support is available for Clearwater Processing invoicing solutions?

How should contractors invoice change orders?

How does progress billing work for contractors?

How can contractors take card payments at the job site securely?

Can maintenance-agreement billing continue when a customer’s card expires?

Can contractors with multiple branches or divisions track payments separately?

What should HVAC, plumbing, and electrical contractors look for in invoicing software?

How should roofers and remodelers handle invoicing on large projects?

How should contractors invoice retainage?

How should contractors handle card versus ACH or check payments on large invoices?

Need Help Choosing Invoicing Tools?

Talk with Clearwater Processing about deposit, progress, change-order, and final invoice payments for your contracting business.

Find the Right Contractor Payment Setup

Tell us how you estimate, invoice, and collect deposits, progress payments, and final balances, and which accounting software you use, so Clearwater Processing can discuss suitable payment solutions.

Contact Us Today

For immediate assistance, feel free to give us a direct call at 973-715-5416.